BRFAA - Biomedical Research Foundation Academy Of Athens
Biomedical Research Foundation Academy Of AthensAcademy Of Athens


Giannopoulos, N.G., Michalopoulos, I., Papandreou, N.C., Malatras, A., Iconomidou, V.A., and Hamodrakas, S.J. (2012) LepChorionDB, a database of Lepidopteran chorion proteins and a set of tools useful for the identification of chorion proteins in Lepidopteran proteomes. Insect Biochem Mol Biol, doi:10.1016/j.ibmb.2012.12.001

Logotheti, S., Papaevangeliou, D., Michalopoulos, I., Sideridou, M., Tsimaratou, K., Christodoulou, I., Pyrillou, K., Gorgoulis, V., Vlahopoulos, S., and Zoumpourlis, V. (2012). Progression of mouse skin carcinogenesis is associated with increased ERα levels and is repressed by a dominant negative form of ERα. PLoS One 7, e41957.

Michalopoulos, I., Pavlopoulos, G.A., Malatras, A., Karelas, A., Kostadima, M.A., Schneider, R., and Kossida, S. (2012). Human gene correlation analysis (HGCA): A tool for the identification of transcriptionally coexpressed genes. BMC Res Notes 5, 265.

Pavlopoulou, A., and Michalopoulos, I. (2011). State-of-the-art bioinformatics protein structure prediction tools (Review). Int J Mol Med 28, 295-310.

Pavlopoulou, A., Pampalakis, G., Michalopoulos, I., and Sotiropoulou, G. (2010). Evolutionary history of tissue kallikreins. PLoS One 5, e13781.

Logotheti, S., Michalopoulos, I., Sideridou, M., Daskalos, A., Kossida, S., Spandidos, D.A., Field, J.K., Vojtesek, B., Liloglou, T., Gorgoulis, V., Zoumpourlis, V. (2010). Sp1 binds to the external promoter of the p73 gene and induces the expression of TAp73γ in lung cancer. The FEBS J 277, 3014-3027.

Roubelakis, M.G., Zotos, P., Papachristoudis, G., Michalopoulos, I., Pappa, K.I., Anagnou, N.P., and Kossida, S. (2009). Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application. BMC Bioinformatics 10 Suppl 6, S20.

Zotos, P., Papachristoudis, G., Roubelakis, M.G., Michalopoulos, I., Pappa, K.I., Anagnou, N.P., and Kossida, S. (2008). GOmir: A stand-alone application for human microRNA target analysis and gene ontology clustering. In 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008, ed., pp. 1-6.

Paliakasis, C.D., Michalopoulos, I., and Kossida, S. (2008). Web-based tools for protein classification. Methods Mol Biol 428, 349-367.

Manfield, I.W., Jen, C.H., Pinney, J.W., Michalopoulos, I., Bradford, J.R., Gilmartin, P.M., and Westhead, D.R. (2006). Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res 34, W504-509.

Jen, C.H., Manfield, I.W., Michalopoulos, I., Pinney, J.W., Willats, W.G., Gilmartin, P.M., and Westhead, D.R. (2006). The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis. Plant J 46, 336-348.

Jen, C.H., Michalopoulos, I., Westhead, D.R., and Meyer, P. (2005). Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation. Genome Biol 6, R51.

Torrance, G.M., Gilbert, D.R., Michalopoulos, I., and Westhead, D.W. (2005). Protein structure topological comparison, discovery and matching service. Bioinformatics 21, 2537-2538.

Michalopoulos, I., Torrance, G.M., Gilbert, D.R., and Westhead, D.R. (2004). TOPS: an enhanced database of protein structural topology. Nucleic Acids Res 32, D251-254.

Dalton, J.A., Michalopoulos, I., and Westhead, D.R. (2003). Calculation of helix packing angles in protein structures. Bioinformatics 19, 1298-1299.

Michalopoulos, I., and Hay, R.T. (1999). Role of the conserved lysine 80 in stabilisation of NF-κB p50 DNA binding. Nucleic Acids Res 27, 503-509.

Rodriguez, M.S., Michalopoulos, I., Arenzana-Seisdedos, F., and Hay, R.T. (1995). Inducible degradation of IκBα in vitro and in vivo requires the acidic C-terminal domain of the protein. Mol Cell Biol 15, 2413-2419.