schedule

to read an abstract, click on the title

Thursday 4 October

9.00 - 9.25

Introduction

Prof Gregory D. Skalkeas,	Professor-Academician,
	President of the Board of Trustees of Biomedical Research Foundation, Academy of Athens
Athanasios Tsouroplis	Affiliated Investigator, Biomedical Research Foundation, Academy of Athens
Sophia Kossida, Biomedical Research Foundation, Academy of Athens

9.25-10.00

"The Swiss Institute of Bioinformatics and the EMBnet organisation"

presentation

L Falquet, Swiss Institute of Bioinformatics

Chairperson Vassilis Promponas, University of Cyprus

10.00-10.25

"Faster Algorithms for Support Value Computation & Parallel Computing for Large-Scale Phylogeny Reconstruction"

presentation

A Stamatakis, Swiss Federal Institute of Technology, Lausanne

10.25-10.50

"General Reconfigurable Architecture for the BLAST algorithm"

presentation

E Sotiriades, A Dollas, Technical University of Crete

10.50-11.05

"An FPGA-based Multiprocessor System for BLAST Algorithm"

presentation

G-G Mplemenos, I Papaefstathiou, Technical University of Crete

11.05-11.25

Coffee break

to top

Chairperson Panayota Poirazi, FORTH-IMBB

11.25-11.50

"Prediction of beta-barrel outer membrane proteins: application to complete genomes"

presentation

PG Bagos, KD Tsirigos, SJ Hamodrakas

11.50-12.15

"Genomes, Genes, Proteins and Computers: Computational Molecular Biology and Bioinformatics Research in the BRL@UCY.AC.CY"

V Promponas, University of Cyprus

12.15-12.40

"Correlation of the performance of protein structure prediction algorithms with the size of the training set"

presentation

GN Tsaousis, PG Bagos, SJ Hamodrakas , University of Athens

12.40-12.55

"OMPdb: A database of beta-barrel outer membrane proteins from Gram-negative bacteria"

presentation

KD Tsirigos, PG Bagos, SJ Hamodrakas , University of Athens

12.55 - 13.55

Lunch Break

to top

Chairperson Elias Manolakos, University of Athens

13.55-14.10

"Upgrading gpDB: Effectors families and their interaction with G proteins"

MC Theodoropoulou, AL Elefsinioti, PG Bagos, IC Spyropoulos, SJ Hamodrakas, University of Athens

14.10-14.35

"Bioinformatics/Computational biology at the University of Athens: History, Current Education and Research activities, Future Perspectives"

SJ Hamodrakas, University of Athens

14.35-14.50

"In silico analysis of regulatory elements of WISP1 and orthologs. Regulatory Sequence comparisons with the coregulated CTGF gene"

M Kapasa, I Serafimidis, A Gavalas, S Kossida,

14.50-15.10

presentation

P Paschou, E Ziv, EG Burchard, S Choudhry, W Rodriguez-Cintron, MW Mahoney, P Drineas

15.10-15.35

"Discovery of regularities in biological sequences and applications in sequence analysis"

K Perdikuri, University of Patras

15.35-15.50

"Protein Structure Prediction Using Residual Dipolar Couplings"

presentation

SI Pantos, IZ Emiris, National Kapodistrian University of Athens

15.50-16.20

Coffee break

to top

Chairperson Pantelis Bagos, University of Central Greece

16.20-16.45

"Gene Prediction: Accurate Prediction of Translation Initiation Sites"

presentation

G Tzanis, Aristotle University of Thessaloniki

16.45-17.10

"Multiresolution Analysis of Proteomics Images using Contourlets"

E Manolakos, University of Athens

17.10-17.25

"ProtCV, a tool for extracting, visualizing and validating protein clusters using mass spectra peak lists"

presentation

S Ventoura, E Giannopoulou, E Manolakos, University of Athens

17.25-17.50

"Identifying stress-related functional modules and extracting regulatory relationship in gene expression patterns"

M Manioudaki, P Poirazi, FORTH-IMBB

Friday 5 October

to top

Chairperson Evripidis Sotiriades, Technical University of Crete

9.00-9.30

"The impact of bioinformatics on drug discovery: past, present and future perspectives"

R Schneider, EMBL, Heidelberg

9.30-9.45

"Arena3D: A visualization tool for high level relationship and clustering analysis in large scale networks"

presentation

G Pavlopoulos, EMBL, Heidelberg

9.45-10.00

"Employing programmatic access to SRS to annotate biological entities"

E Pafilis, EMBL, Heidelberg

10.00-10.15

"A method for identifying the interesting abstracts from a relevant collection"

T Soldatos, EMBL, Heidelberg

10.15-10.30

"Pepsite: A structural method to predict peptide/protein binding"

presentation

E Petsalaki, A Stark, EG Urdiales, RB Russell, EMBL, Heidelberg

10.30-10.45

"Multi-Objective De Novo Drug Design Using A Novel Evolutionary Algorithm"

presentation

CA Nicolaou, CS Pattichis, University of Cyprus

10.45-11.00

"Contributions of GC on gene expression: recognizing the roles of GC"

S Arhondakis, Laboratory of Molecular Evolution, Stazione Zoologica A. Dohrn, Naples, Italy

11.00 - 11.20

Coffee break

to top

Chairperson George Loudos, Technological Institute of Athens

11.20-11.45

"A new digital architecture for dependable, ultra-low-power biomedical implants"

presentation

C Strydis, GN Gaydadjiev, S Vassiliadis, Delft University of Technology

11.45-12.05

"Evaluation aspects of the e-Herophilus telecardiology model"

presentation

AN Kastania, G Loudos, N Sgouros, V Stamatopoulos, S Demarias, A Gavala, C Davos, A Tsipis, C Boudoulas, S Kossida, Biomedical Research Foundation of the Academy of Athens

12.05-12.20

"Implantable RFID Chips: Usage Perspectives in healthcare"

presentation

E Antoniadou, P Koustas, University of Central Greece, Papageorgiou General Hospital of Thessaloniki

12.20-12.40

"Care Process Pathways centred Electronic Health Record for improved clinical decision quality, implementation of new knowledge and patient safety."

VG Stamatopoulos, B Manning, GE Karagiannis, Biomedical Research Foundation of the Academy of Athens

12.40-13.05

"Causal Discovery in Biomedicine"

presentation

I Tsamardinos, FORTH-ICS

13.05-14.00